PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 1579aa    MW: 178085 Da    PI: 5.3644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.105.4E-742161IPR011990Tetratricopeptide-like helical domain
PfamPF047817.2E-2750158IPR006866Domain of unknown function DUF627, N-terminal
SuperFamilySSF484521.01E-650157IPR011990Tetratricopeptide-like helical domain
PfamPF047802.2E-179313833IPR006865Domain of unknown function DUF629
PROSITE patternPS000280371392IPR007087Zinc finger, C2H2
SuperFamilySSF540015.49E-3412461577No hitNo description
PfamPF004431.7E-2212461575IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
PROSITE profilePS5023522.70812461578IPR028889Ubiquitin specific protease domain
CDDcd022573.36E-1713371576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016579Biological Processprotein deubiquitination
GO:0005515Molecular Functionprotein binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1579 aa     Download sequence    Send to blast
MGQKEKPPAP RSKQSLSSSA AEAQPSSEVS ASTSYEEPSN LAEIKAECEK ALTSFRRGSY  60
NKAIRLMKES CSRHQHSALI HRVQGTVCVK VSSVYEDAVT KQKYIRSAIE SARKAVELSP  120
NSIEFSHFYA NLLYESASDG REYEEVVREC HRALAIENPI DPAKDSLQDE SQHKILTPEA  180
RIANVQDELR SLIQKSNLGS LSTWMKHLRN GEGEFRLFDM RKMAEDPIES NLVQTRRPNE  240
IKKATKTLEE KRKEIEVRVA AGRLLQQKSE SSSVDSVNSK GSDPALGSGQ RSGERRKHGN  300
ARKNGSTVER RDRVRSYWES TSKEMKKELL RIKVSDLKSH FSASKDGDAN DIIAEALSFC  360
EANKTWRFWV CCKCSEKFKD SESYMQHIVG EHMGNVFPKM QMVLPQSLDS ERIEMLLTSP  420
WKPLDFPAVV KLLCSQQKIQ NSEFSEFYAG GYMDDGDDCF QDAWNDTSPE KENIGDACNG  480
YEKNESEKDR LPNPFYLTDE WPISDDPERT KLLKSIRAAF ELLIKHSYLA TSHYDKVIQF  540
TLDELRNLPS VSQFLNRGLG QSPICIRFLG ATQLKKILQF LQDLSHACGV SRYSEQSNPN  600
DEVDLGLQIT EEIFLDGEGS CLLLDEKLLG SECIQEKHMG SALNNGDIAS SEDIANGNNV  660
SAGADGFLSW IFSGPSSGEQ TAIWMRTVEE KTNQGQKTME ILEKEVHDLQ NLFERKCEHL  720
GYEGALQTVE DLCLEEGRKR ETSPDFTHES YESVLRKRRE ELSAHELEFF SSSFELEAIK  780
NVLRDADTLK RNQFGYEESY TCTSSQLRDL ESGEADEWGM KDSFSEADSF IETAIQKQKE  840
QLSTELNRID ARMMRGVTVV QQLELRLGPA SSNDYQIVML PLVRSYMRAH LEALAEKDAT  900
EKSDAASKAF LVELALDSKK EARGRNDHSK HTQEKSKDKK KNKHSKKLKD SKASVGNDHR  960
FNVDSVEHSL PSVASFGDPS EADVVPEAVE SLKEQEEECK CRRRTELELD EIKLEETLEY  1020
QRRIENEAKE KHIAEQQKKY SSLVTTSDAE AVHDICRDGV FVDLDLREQE KSLSQENLVQ  1080
RNGLSHDLEV THVYTNGDCR STNHCAIPDA ATVQDVKSQK VVANGVATQD GVLQSDQRIG  1140
RRGRRQKTSN KVVGPSESTG KERESETLRS NGDVGTKTLR QLQAEEDEEE KFQADLKKAV  1200
RQSLDTYQGG RNMTSCLRTP LEVNSHEISD STKESPSSTE VGIFGTGLQN EVGEYNCFLN  1260
VIIQSLWNLG VFRAEFLRSS TLDHHHVGDP CVVCSLYEVL TALSAASREI RKEPVTPSTL  1320
RIALSNLYPD SSFFQEAQMN DASEVLAVIF DCLHRSFAQS ASVSDTDSSE SNYTGSWDCA  1380
NRTCIAHSLF GMNIFEQLNC YSCGLESRHM KYTSFFHNIN ASALRNMKVT CPETAFDELL  1440
NLVEMNHQIA CDPETGGCGK PNHIRHFLNT PPHVFTAVLG WQNTCESVED IAATLAALNT  1500
EIDISIMYRG LDPKSIYSLA SVVCYYGQHY HCFAYSHEHD RWIMYDDKTV KVIGSWTDVL  1560
STCKKGHLQP QLLLYEKQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737758RKRETSPDFTHESYESVLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149858.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103873186
TrEMBLM4DNL40.0M4DNL4_BRARP; Uncharacterized protein
STRINGBra018101.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM294036